Error while installing climt

rvalenzuelar commented 4 years ago

CliMT version: 0.16.3
Python version: 3.6.9
Operating System: MacOS Mojave

Description

I was trying to install Climt. I got an error. I expected to install Climt.

What I Did

Cloned climt from Github
make new conda environment
installed python 3.6
run pip install -r requirements_dev.txt
run python setup.py install

Got the following traceback:

Compilers:  gcc-6 gfortran-6
running install
running bdist_egg
running egg_info
writing climt.egg-info/PKG-INFO
writing dependency_links to climt.egg-info/dependency_links.txt
writing requirements to climt.egg-info/requires.txt
writing top-level names to climt.egg-info/top_level.txt
reading manifest file 'climt.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.so' under directory 'climt'
warning: no files found matching '*.dylib' under directory 'climt'
warning: no files found matching '*.pyd' under directory 'climt'
no previously-included directories found matching 'climt/_lib/lib'
no previously-included directories found matching 'climt/_lib/share'
no previously-included directories found matching 'climt/_lib/include'
no previously-included directories found matching 'climt/_lib/bin'
no previously-included directories found matching 'climt/_lib/fftw*'
no previously-included directories found matching 'climt/_lib/shtns*'
warning: no previously-included files found matching 'climt/_lib/.configured*'
warning: no previously-included files matching '*.pyc' found under directory 'climt'
warning: no previously-included files matching '*.mod' found under directory 'climt'
warning: no previously-included files matching '*.o' found under directory 'climt'
warning: no previously-included files matching '*.c' found under directory 'climt'
warning: no previously-included files matching '__pycache__' found under directory '*'
no previously-included directories found matching 'tests/__pycache__'
warning: no files found matching '*.gif' under directory 'docs'
writing manifest file 'climt.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.7-x86_64/egg
running install_lib
running build_py
creating build/lib.macosx-10.7-x86_64-3.6
creating build/lib.macosx-10.7-x86_64-3.6/climt
copying climt/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/climt
creating build/lib.macosx-10.7-x86_64-3.6/climt/_components
copying climt/_components/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components
copying climt/_components/_berger_solar_insolation.pyx -> build/lib.macosx-10.7-x86_64-3.6/climt/_components
copying climt/_components/berger_solar_insolation.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components
copying climt/_components/grid_scale_condensation.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components
copying climt/_components/held_suarez.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components
copying climt/_components/radiation.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components
copying climt/_components/slab_surface.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components
copying climt/_components/surface_ice.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components
creating build/lib.macosx-10.7-x86_64-3.6/climt/_components/dcmip
copying climt/_components/dcmip/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/dcmip
copying climt/_components/dcmip/_dcmip.pyx -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/dcmip
copying climt/_components/dcmip/component.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/dcmip
creating build/lib.macosx-10.7-x86_64-3.6/climt/_components/dry_convection
copying climt/_components/dry_convection/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/dry_convection
copying climt/_components/dry_convection/component.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/dry_convection
creating build/lib.macosx-10.7-x86_64-3.6/climt/_components/emanuel
copying climt/_components/emanuel/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/emanuel
copying climt/_components/emanuel/_emanuel_convection.pyx -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/emanuel
copying climt/_components/emanuel/component.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/emanuel
creating build/lib.macosx-10.7-x86_64-3.6/climt/_components/gfs
copying climt/_components/gfs/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/gfs
copying climt/_components/gfs/_gfs_dynamics.pyx -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/gfs
copying climt/_components/gfs/component.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/gfs
creating build/lib.macosx-10.7-x86_64-3.6/climt/_components/instellation
copying climt/_components/instellation/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/instellation
copying climt/_components/instellation/component.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/instellation
creating build/lib.macosx-10.7-x86_64-3.6/climt/_components/rrtmg
copying climt/_components/rrtmg/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/rrtmg
copying climt/_components/rrtmg/rrtmg_common.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/rrtmg
creating build/lib.macosx-10.7-x86_64-3.6/climt/_components/rrtmg/lw
copying climt/_components/rrtmg/lw/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/rrtmg/lw
copying climt/_components/rrtmg/lw/_rrtmg_lw.pyx -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/rrtmg/lw
copying climt/_components/rrtmg/lw/component.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/rrtmg/lw
creating build/lib.macosx-10.7-x86_64-3.6/climt/_components/rrtmg/sw
copying climt/_components/rrtmg/sw/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/rrtmg/sw
copying climt/_components/rrtmg/sw/_rrtmg_sw.pyx -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/rrtmg/sw
copying climt/_components/rrtmg/sw/component.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/rrtmg/sw
creating build/lib.macosx-10.7-x86_64-3.6/climt/_components/second_best
copying climt/_components/second_best/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/second_best
creating build/lib.macosx-10.7-x86_64-3.6/climt/_components/simple_physics
copying climt/_components/simple_physics/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/simple_physics
copying climt/_components/simple_physics/_simple_physics.pyx -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/simple_physics
copying climt/_components/simple_physics/component.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_components/simple_physics
creating build/lib.macosx-10.7-x86_64-3.6/climt/_core
copying climt/_core/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_core
copying climt/_core/constants.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_core
copying climt/_core/initialization.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_core
copying climt/_core/util.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_core
creating build/lib.macosx-10.7-x86_64-3.6/climt/_data
copying climt/_data/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_data
copying climt/_data/ozone_profile.npy -> build/lib.macosx-10.7-x86_64-3.6/climt/_data
creating build/lib.macosx-10.7-x86_64-3.6/climt/_lib
copying climt/_lib/Makefile -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib
copying climt/_lib/OpenBLAS-0.2.19.tar.gz -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib
copying climt/_lib/fftw-3.3.6-pl2.tar.gz -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib
copying climt/_lib/shtns-2.7-r557.tar.gz -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib
creating build/lib.macosx-10.7-x86_64-3.6/climt/_lib/Darwin
copying climt/_lib/Darwin/.temp -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/Darwin
creating build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/Makefile -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/Makefile.conf -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/Makefile.conf.gfortran -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/Makefile.conf.ifort -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/driver.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/dyn_finalize.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/dyn_init.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/dyn_run.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/finalize.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/gfs_namelist -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/grid_data.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/init.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/kinds.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/params.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/phy_data.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/phy_finalize.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/phy_init.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/phy_run.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/phy_run_stub.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/physcons.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/pressure_data.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/run.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/semimp_data.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/shtns.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
copying climt/_lib/GFS/spectral_data.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/GFS
creating build/lib.macosx-10.7-x86_64-3.6/climt/_lib/Linux
copying climt/_lib/Linux/.temp -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/Linux
creating build/lib.macosx-10.7-x86_64-3.6/climt/_lib/Windows
copying climt/_lib/Windows/.temp -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/Windows
creating build/lib.macosx-10.7-x86_64-3.6/climt/_lib/dcmip
copying climt/_lib/dcmip/Makefile -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/dcmip
copying climt/_lib/dcmip/dcmip_initial_conditions_test_1_2_3_v5.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/dcmip
copying climt/_lib/dcmip/dcmip_initial_conditions_test_4_v3.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/dcmip
copying climt/_lib/dcmip/dcmip_initial_conditions_test_5_v1.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/dcmip
creating build/lib.macosx-10.7-x86_64-3.6/climt/_lib/emanuel
copying climt/_lib/emanuel/Makefile -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/emanuel
copying climt/_lib/emanuel/convect43c.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/emanuel
creating build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/Makefile -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/mcica_random_numbers.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/mcica_subcol_gen_lw.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/parkind.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/parrrtm.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_cld.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_con.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg01.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg02.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg03.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg04.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg05.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg06.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg07.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg08.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg09.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg10.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg11.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg12.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg13.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg14.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg15.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_kg16.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_ncpar.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_ref.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_tbl.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_vsn.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrlw_wvn.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrtmg_lw_c_binder.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrtmg_lw_cldprmc.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrtmg_lw_cldprop.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrtmg_lw_init.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrtmg_lw_k_g.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrtmg_lw_rad.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrtmg_lw_rad.nomcica.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrtmg_lw_read_nc.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrtmg_lw_rtrn.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrtmg_lw_rtrnmc.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrtmg_lw_rtrnmr.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrtmg_lw_setcoef.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/rrtmg_lw_taumol.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
copying climt/_lib/rrtmg_lw/setup.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_lw
creating build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/Makefile -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/README -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/mcica_random_numbers.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/mcica_subcol_gen_sw.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/parkind.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/parrrsw.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_aer.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_cld.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_con.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_kg16.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_kg17.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_kg18.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_kg19.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_kg20.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_kg21.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_kg22.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_kg23.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_kg24.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_kg25.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_kg26.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_kg27.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_kg28.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_kg29.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_ncpar.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_ref.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_tbl.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_vsn.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrsw_wvn.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrtmg_sw_c_binder.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrtmg_sw_cldprmc.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrtmg_sw_cldprop.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrtmg_sw_init.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrtmg_sw_k_g.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrtmg_sw_rad.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrtmg_sw_rad.nomcica.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrtmg_sw_reftra.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrtmg_sw_setcoef.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrtmg_sw_spcvmc.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrtmg_sw_spcvrt.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrtmg_sw_taumol.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/rrtmg_sw_vrtqdr.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
copying climt/_lib/rrtmg_sw/setup.py -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/rrtmg_sw
creating build/lib.macosx-10.7-x86_64-3.6/climt/_lib/simple_physics
copying climt/_lib/simple_physics/Makefile -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/simple_physics
copying climt/_lib/simple_physics/simple_physics_custom.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/simple_physics
copying climt/_lib/simple_physics/simple_physics_v5_1.f90 -> build/lib.macosx-10.7-x86_64-3.6/climt/_lib/simple_physics
running build_ext
if [ ! -d OpenBLAS-0.2.19 ]; then tar -xvzf OpenBLAS-0.2.19.tar.gz > log 2>&1; fi; cd OpenBLAS-0.2.19; CFLAGS="-I/Users/raulvalenzuela/Github/climt/climt/_lib -L/Users/raulvalenzuela/Github/climt/climt/_lib/Darwin/ -fPIC -O3 -mmacosx-version-min=10.7" make NO_SHARED=1 NO_LAPACK=0 > log 2>&1 ; make PREFIX=/Users/raulvalenzuela/Github/climt/climt/_lib NO_SHARED=1 NO_LAPACK=0 install > log.install.blas 2>&1 ; cp ../lib/libopenblas.a /Users/raulvalenzuela/Github/climt/climt/_lib/Darwin/
cp: ../lib/libopenblas.a: No such file or directory
make: *** [Darwin/libopenblas.a] Error 1
Traceback (most recent call last):
  File "setup.py", line 285, in <module>
    tests_require=test_requirements
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/site-packages/setuptools/__init__.py", line 145, in setup
    return distutils.core.setup(**attrs)
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/distutils/core.py", line 148, in setup
    dist.run_commands()
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/distutils/dist.py", line 955, in run_commands
    self.run_command(cmd)
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/distutils/dist.py", line 974, in run_command
    cmd_obj.run()
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/site-packages/setuptools/command/install.py", line 67, in run
    self.do_egg_install()
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/site-packages/setuptools/command/install.py", line 109, in do_egg_install
    self.run_command('bdist_egg')
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/distutils/dist.py", line 974, in run_command
    cmd_obj.run()
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/site-packages/setuptools/command/bdist_egg.py", line 172, in run
    cmd = self.call_command('install_lib', warn_dir=0)
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/site-packages/setuptools/command/bdist_egg.py", line 158, in call_command
    self.run_command(cmdname)
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/distutils/dist.py", line 974, in run_command
    cmd_obj.run()
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/site-packages/setuptools/command/install_lib.py", line 11, in run
    self.build()
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/distutils/command/install_lib.py", line 107, in build
    self.run_command('build_ext')
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/Users/raulvalenzuela/miniconda2/envs/climt2/lib/python3.6/distutils/dist.py", line 974, in run_command
    cmd_obj.run()
  File "setup.py", line 168, in run
    build_libraries()
  File "setup.py", line 159, in build_libraries
    raise RuntimeError('Library build failed, exiting')
RuntimeError: Library build failed, exiting

JoyMonteiro commented 4 years ago

Hello Raul,

any reason you need to install from source? There is a binary wheel available for Mac (climt 0.16.3). could you see if

pip install climt==0.16.3

works for you?

There have been other people with issues building climt on Mac as well, which is why I recommend using the binary unless you want to change some Fortran-level code.

rvalenzuelar commented 4 years ago

Hi Joy, I tried with pip also but I got a similar error in this section:

if [ ! -d OpenBLAS-0.2.19 ]; then tar -xvzf OpenBLAS-0.2.19.tar.gz > log 2>&1; fi; cd OpenBLAS-0.2.19; CFLAGS="-I/Users/raulvalenzuela/Github/climt/climt/_lib -L/Users/raulvalenzuela/Github/climt/climt/_lib/Darwin/ -fPIC -O3 -mmacosx-version-min=10.7" make NO_SHARED=1 NO_LAPACK=0 > log 2>&1 ; make PREFIX=/Users/raulvalenzuela/Github/climt/climt/_lib NO_SHARED=1 NO_LAPACK=0 install > log.install.blas 2>&1 ; cp ../lib/libopenblas.a /Users/raulvalenzuela/Github/climt/climt/_lib/Darwin/
cp: ../lib/libopenblas.a: No such file or directory
make: *** [Darwin/libopenblas.a] Error 1

JoyMonteiro commented 4 years ago

Hello Raul,

this should be because you tried

pip install climt

which tries to install the latest 0.16.9 version. Due to Travis acting unpredictably, I have disabled travis Mac builds since 0.16.3 (I intend to resume Mac builds using Azure pipelines in the coming month or so).

Therefore, you could try and see if

pip install climt==0.16.3

works, since this version has a prebuilt binary for Mac. See https://pypi.org/project/climt/0.16.3/#files

JoyMonteiro commented 4 years ago

If you tried install 0.16.3 and pip decided to use a source install for some reason (it should not for Mojave), then the reasons for failure will be present in the openblas directory (climt/_lib/openblas/)

it should be a file called log and/or log.install.blas.

rvalenzuelar commented 4 years ago

Ok, I successfully installed climt. I made a new environment with python=3.6 and then run

pip install climt==0.16.3

Probably the issue was due to python 2.7?

JoyMonteiro commented 4 years ago

Great! Yes, we do not support binary builds for py27 on Mac, since most users use the anaconda distribution.

JoyMonteiro commented 4 years ago

I just uploaded climt wheels for 0.16.9 for Mac. hopefully now you should be able to install the latest version!

CliMT / climt

Error while installing climt #117

Description

What I Did