Animal Model Only tag

[wrightmw]

Screenshot from presentation by @marinadistefano just now.

@marinadistefano @ErinRiggs @jennygoldstein @courtneythaxton Would you like us to automatically add a tag in the Evidence Summary or somewhere else in the GCI?

[courtneythaxton]

I like the idea of having a tag for this on the Evidence summary or have it highlighted somewhere

Courtney Thaxton, Ph.D. Assistant Director, UNC Biocuration and Coordination Core Berg Lab, UNC Dept. of Genetics 120 Mason Farm Road 5100 B, Genetic Medicine Building CB#7264 University of North Carolina, Chapel Hill, NC 27599 919-966-9562

From: "Matt W. Wright" notifications@github.com<mailto:notifications@github.com> Reply-To: ClinGen/clincoded reply@reply.github.com<mailto:reply@reply.github.com> Date: Thursday, June 27, 2019 at 12:54 PM To: ClinGen/clincoded clincoded@noreply.github.com<mailto:clincoded@noreply.github.com> Cc: Courtney Thaxton courtney_thaxton@med.unc.edu<mailto:courtney_thaxton@med.unc.edu>, Mention mention@noreply.github.com<mailto:mention@noreply.github.com> Subject: [ClinGen/clincoded] Animal Model Only tag (#1959)

[Screen Shot 2019-06-27 at 9 46 04 AM]https://user-images.githubusercontent.com/15131169/60284483-8724f600-98c0-11e9-9164-65582bc501db.png

Screenshot from presentation by @marinadistefanohttps://github.com/marinadistefano just now.

@marinadistefanohttps://github.com/marinadistefano @ErinRiggshttps://github.com/ErinRiggs @jennygoldsteinhttps://github.com/jennygoldstein @courtneythaxtonhttps://github.com/courtneythaxton Would you like us to automatically add a tag in the Evidence Summary or somewhere else in the GCI?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/ClinGen/clincoded/issues/1959?email_source=notifications&email_token=AHYF4VMOFOMC2BQP5L7TAEDP4TWDRA5CNFSM4H356762YY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4G4ECM3A, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AHYF4VOVPX5PD7SLCP3XJHTP4TWDRANCNFSM4H35676Q.

[wrightmw]

Maybe right at the top of the Evidence Summary in the top box? @marinadistefano @ErinRiggs @jennygoldstein @courtneythaxton

[wrightmw]

And somewhere at the bottom of the Classification Matrix?

[marinadistefano]

Matt,

You're slated to join the GC small call on Monday. We could confirm then.

Marina

---

From: Matt W. Wright notifications@github.com Sent: Thursday, June 27, 2019 1:05:34 PM To: ClinGen/clincoded Cc: DiStefano, Marina,Ph.D.; Mention Subject: Re: [ClinGen/clincoded] Animal Model Only tag (#1959)

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And somewhere at the bottom of the Classification Matrix? [Screen Shot 2019-06-27 at 10 04 48 AM]https://user-images.githubusercontent.com/15131169/60285763-17fcd100-98c3-11e9-8122-e32523642e1b.png

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[wrightmw]

@marinadistefano Sounds good to me!

[wrightmw]

@marinadistefano @ErinRiggs @jennygoldstein @courtneythaxton I can't make this Monday's meeting. I can join the following week, or you guys could discuss this without me and fill in the details in this ticket?

[marinadistefano]

We can probably just fill in the ticket without you Matt. Thanks!

On Jun 28, 2019, at 12:00 AM, Matt W. Wright notifications@github.com<mailto:notifications@github.com> wrote:

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@marinadistefanohttps://github.com/marinadistefano @ErinRiggshttps://github.com/ErinRiggs @jennygoldsteinhttps://github.com/jennygoldstein @courtneythaxtonhttps://github.com/courtneythaxton I can't make this Monday's meeting. I can join the following week, or you guys could discuss this without me and fill in the details in this ticket?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/ClinGen/clincoded/issues/1959?email_source=notifications&email_token=AHFKA6VG67VM4SWDIHLLHSTP4WEFXA5CNFSM4H356762YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODYY7PTA#issuecomment-506591180, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AHFKA6UM5CWYGIG7HCUY4T3P4WEFXANCNFSM4H35676Q.

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[gcheung-SF]

How about adding the tag in following area? -- Evidence Summary

-- Classification Matrix

[ErinRiggs]

Hi Gloria! Thanks for getting this started. A few suggestions:

• Just to be clear, the "animal model only" tag should only appear when the classification is "No reported evidence" (the example shows a "Limited" classification).
• We'd like the tags to appear 1) Next to "modified classification" at the top (blue box under the words "Evidence Summary" and 2) Next to "last saved summary classification" at the bottom on the classification matrix

[wrightmw]

@sgoehringer and @tnavatar ... can you let us know the logic you are using to apply the "animal model only" tag on the website to make sure we are applying this tag in the same way?

[gcheung-SF]

The Animal Model tag should only apply if the final classification is automatically calculated as "No Known Disease Relationship" (previous know as "No Reported Evidence", changed in #1913) and there is only non-human data.

The tags to appear 1) Next to "modified classification" at the top (blue box under the words "Evidence Summary" and 2) Next to calculated classification at the bottom on the classification matrix

[wrightmw]

Looks great. Exactly as expected. Tag appears (in Classification Matrix and Evidence Summary) with No Reported Evidence only when there is non-human only evidence.

[wrightmw]

Released in R32