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ClinGen / clincoded

This GCI/VCI 1.0 platform has now been retired, and replaced with our new 2.0 platform:
https://github.com/ClinGen/gene-and-variant-curation-tools/issues
MIT License
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Ability to add tags to interpretations #2093

Closed wrightmw closed 3 years ago

wrightmw commented 4 years ago

Tag use cases:

  1. Alerts (e.g. new publication, new ClinVar entry, time for re-evaluation, etc) Auto-tags added by VCI
    • New ClinVar entry
      • Triggered by: new ClinVar entry for the variant that is a different (3-level: B/VUS/P) pathogenicity than the approved and submitted to ClinVar curation by the VCEP.
        • Re-evaluation:
      • Triggered by: 2 years from approval date for Likely Path/VUS interpretations. (Steven to check details)
  2. Bulk-tagging (e.g. VP added, ClinVar reports)
    • Added in bulk by system - triggered by curator action
    • Need two layers: 1: Action and 2: Additional info like ClinVar data, date submitted etc.
    • Need to be able to sort on both layers.
    • High priority but dependent on these features,
  3. Free text options (use case: workflow items)
    • ex: denote all variants that use data from a single paper, reviewed pending approval, awaiting patient data from lab.
    • Pre-populated set of options: Pilot Variant, Conflict Resolution, Re-curation

See for scoping: https://broadinstitute.atlassian.net/browse/CSP-102 See for mockups: https://docs.google.com/presentation/d/1bhhzm8ZlkwNHGc2WI-UlcZC5m-TwDQMa5NSteG3sKwQ/edit#slide=id.g9ffe19a625_0_11

wrightmw commented 3 years ago

Closed in favor of #2244