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ClinGen / clincoded

This GCI/VCI 1.0 platform has now been retired, and replaced with our new 2.0 platform:
https://github.com/ClinGen/gene-and-variant-curation-tools/issues
MIT License
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Ability to Add Tags to Interpretations #2244

Closed wrightmw closed 2 years ago

wrightmw commented 3 years ago

Discussed on GCWG call today (10/14/2020). Need to specify what tags would be useful for use in the GCI. A parallel project is currently underway in the VCI (#2093 ).

What are the different use cases in the GCI? Good topic for a Monday call?

@erinriggs @courtneythaxton @marinadistefano

wrightmw commented 3 years ago

Tag use cases:

Alerts (e.g. new publication, new ClinVar entry, time for re-evaluation, etc) Auto-tags added by VCI New ClinVar entry Triggered by: new ClinVar entry for the variant that is a different (3-level: B/VUS/P) pathogenicity than the approved and submitted to ClinVar curation by the VCEP. Re-evaluation: Triggered by: 2 years from approval date for Likely Path/VUS interpretations. (Steven to check details) Bulk-tagging (e.g. VP added, ClinVar reports) Added in bulk by system - triggered by curator action Need two layers: 1: Action and 2: Additional info like ClinVar data, date submitted etc. Need to be able to sort on both layers. High priority but dependent on these features, Free text options (use case: workflow items) ex: denote all variants that use data from a single paper, reviewed pending approval, awaiting patient data from lab. Pre-populated set of options: Pilot Variant, Conflict Resolution, Re-curation See for scoping: https://broadinstitute.atlassian.net/browse/CSP-102 See for mockups: https://docs.google.com/presentation/d/1bhhzm8ZlkwNHGc2WI-UlcZC5m-TwDQMa5NSteG3sKwQ/edit#slide=id.g9ffe19a625_0_11

wrightmw commented 2 years ago

Replaced by https://github.com/ClinGen/gene-and-variant-curation-tools/issues/15