ClinGen / clincoded

This GCI/VCI 1.0 platform has now been retired, and replaced with our new 2.0 platform:
https://github.com/ClinGen/gene-and-variant-curation-tools/issues
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VP: logic for molecular consequences #2257

Closed cgpreston closed 2 years ago

cgpreston commented 3 years ago

For launch of the VP, we wish to leverage the MANE project to streamline and clarify the molecular consequences view (columns) and filter experience for users.

Version 1: (needed for launch)

  1. Display only the molecular consequence of the MANE select RefSeq transcript for the variant.
  2. Update the column header to say "Molecular Consequences - MANE select transcript"
  3. Update the "Molecular Consequences" filter to note that "The VP uses MANE select [current version] transcripts"

Version 2: (nice to have but not essential for launch)

  1. Have MANE select be the default molecular consequence column shown, have this column still refer to "MANE select'
  2. Offer additional filters for "MANE plus clinical" transcripts
  3. Display a column of "Molecular Consequences, all MANE transcripts"
cgpreston commented 3 years ago
Screen Shot 2020-11-23 at 2 19 03 PM
cgpreston commented 3 years ago
Screen Shot 2020-11-23 at 2 19 13 PM
cgpreston commented 2 years ago

Launched v1 with VP, closing this and transferring V2 features to ticket #2311