Export all used PMIDs from the VCI to the ERepo and ClinVar output

ClinGen / gene-and-variant-curation-tools

ClinGen's gene and variant curation interfaces (GCI & VCI). Developed by Stanford ClinGen team.

https://curation.clinicalgenome.org/

MIT License

3 stars 1 forks source link

Export all used PMIDs from the VCI to the ERepo and ClinVar output #177

Open cgpreston opened 2 years ago

cgpreston commented 2 years ago

Ensure all PMIDs used by the curators are added to the output for the VCI to the ERepo and ClinVar. Currently only a subset of associated PMIDs added as evidence are being added (it appears the Case/Seg tab articles are being left out often).

Note: As the VCI doesn't have evidence specification simply providing all added PMIDs could introduce in additional errors.

SP ticket: https://broadinstitute.atlassian.net/browse/CGSP-457

wrightmw commented 2 years ago

Note: On the VC WG call on 04/01/2022 it was suggested that the PMIDs specified in the Evidence Summary could be scraped and used to generate a list of PMIDs for export.