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ClinGen / gene-and-variant-curation-tools

ClinGen's gene and variant curation interfaces (GCI & VCI). Developed by Stanford ClinGen team.
https://curation.clinicalgenome.org/
MIT License
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GCI "interacting genes" forced capitalization #248

Closed cgpreston closed 11 months ago

cgpreston commented 1 year ago

In the GCI if you do the following:

  1. Add experimental evidence
  2. Select "protein interactions" from the pull down menu
  3. Go to the "Interacting gene(s) (HGNC symbol):" required field

You will NOT be able to enter lower case values into the HGNC field. While normally this is correct, there are a few examples ("C9orf72" being the use case that identified this issue) where HGNC does include lower case values, and curators are blocked from then entering those genes. Please fix.

Screen Shot 2022-09-15 at 1 23 09 PM

Note: to start a GCI curation you also cannot enter lower case values, however it recognizes "C9ORF72" and then transposes it to "C9orf72" in the interface.... can we do the same thing for the "interacting genes" section?

markmandell commented 1 year ago

Given that we recognize this gene when starting a GCI curation as Christine mentions, I am sure we can do the same for this input in experimental evidence 👍

liammulh commented 1 year ago

I think I have a patch in https://github.com/ClinGen/gci-vci-aws/commit/4092d0e244564e5a4fd34a2795411c42f3e25c2f. I will deploy this in my next batch of fixes.

liammulh commented 11 months ago

This is working on the test site.

liammulh commented 11 months ago

This is now in prod.