Allow GCI users to see useful VCI information about variants.
When users add in a Variant ID, see if there is a VCI interpretation for the variant. For display of variant, the suggestion is to use the “All interpretations table" as a template: Variant title, Variant ID(s), Disease name/MONDO, MOI, Creator, Date created
& if an interpretation has a status of Approved in the VCI then there would be the chainlink present to link to the viewable evidence summary
HMAF in Evidence Summary Table (see https://github.com/ClinGen/gene-and-variant-curation-tools/issues/4). In the "Genetic Evidence: Case Level (variants, segregation)" table in the Evidence Summary in the GCI, the curators would like to include a new column that shows the HMAF calculated in the VCI. This new column would be placed after the "Variant" column, and called something like "HMAF". This column would display two values:
Source: (e.g. ESP, gnomAD, ExAC, 1KG)
Allele Frequency: #.####
-It would be nice to be able to initiate a VCI interpretation from within the GCI when adding variants.
-It would be nice to be able to see the predictor information in the GCI.
cgpreston
commented
2 years ago
Allow GCI users to see useful VCI information about variants.
When users add in a Variant ID, see if there is a VCI interpretation for the variant. For display of variant, the suggestion is to use the “All interpretations table" as a template: Variant title, Variant ID(s), Disease name/MONDO, MOI, Creator, Date created & if an interpretation has a status of Approved in the VCI then there would be the chainlink present to link to the viewable evidence summary
-It would be nice to be able to initiate a VCI interpretation from within the GCI when adding variants.
-It would be nice to be able to see the predictor information in the GCI.