The dbNSFP annotation set will in some cases have values for all or only a subset of the known transcripts. Is there a way to limit retrieval of annotations to a single transcript, or to predict the order of the lists?
For example, for the variant NM_000546.6(TP53):c.833C>G I would like the REVEL and Alphamissense annotations. From the dbNSFP data set we can see the these annotations are available only a different subset of the transcripts - see attached text file dbNSFP_query.txt
If I want values only for ENST00000269305 (the 9th item in the list) is there a way to limit the search to only that transcript? Alternatively (and ideally) could the list order be maintained with empty fields e.g:
The dbNSFP annotation set will in some cases have values for all or only a subset of the known transcripts. Is there a way to limit retrieval of annotations to a single transcript, or to predict the order of the lists?
For example, for the variant NM_000546.6(TP53):c.833C>G I would like the REVEL and Alphamissense annotations. From the dbNSFP data set we can see the these annotations are available only a different subset of the transcripts - see attached text file dbNSFP_query.txt
I can use this query to retrieve the values: https://myvariant.info/v1/variant/chr17:g.7673787G%3EC?assembly=hg38&fields=dbnsfp.revel,dbnsfp.alphamissense,dbnsfp.ensembl.transcriptid
But the output lists have 19 values (transcripts), 16 values (alphamissense.score) and 6 values (revel.score), without an obvious order:
If I want values only for ENST00000269305 (the 9th item in the list) is there a way to limit the search to only that transcript? Alternatively (and ideally) could the list order be maintained with empty fields e.g:
"score": [0.951,0.951,0.951,0.951,0.951,.,.,.,0.951,.,.,.,.,.,.,.,.,.,]