Provide support for variant-based literature search/identification in the VCI/GCI
Suggestions (need details for all):
Provide Google scholar search string for variant
Provide LitVar link for variant
Provide Pubmed search for variant
Support Mastermind searches - UCSC has a mastermind track we might be able to bring in.
Show PMIDs that have been associated as evidence with that variant by other users (Note that the VCI does this in the evidence section.)
Support other curated literature sources
Provide a "PMID library" feature: where users can search all PMIDs associated with variants/genes in the curation interfaces as well as leave and view notes about the articles.
An organized HGVS search string was mentioned by Marina as useful.
Provide support for variant-based literature search/identification in the VCI/GCI
Suggestions (need details for all):
Provide Google scholar search string for variant Provide LitVar link for variant Provide Pubmed search for variant Support Mastermind searches - UCSC has a mastermind track we might be able to bring in. Show PMIDs that have been associated as evidence with that variant by other users (Note that the VCI does this in the evidence section.) Support other curated literature sources Provide a "PMID library" feature: where users can search all PMIDs associated with variants/genes in the curation interfaces as well as leave and view notes about the articles.
An organized HGVS search string was mentioned by Marina as useful.
See page 14 in the VCI SOP for search string suggestions: https://clinicalgenome.org/site/assets/files/7438/variant_curation_sop_v3_2_oct_2022.pdf
Replaced https://github.com/ClinGen/clincoded/issues/1986
SP ticket: https://broadinstitute.atlassian.net/browse/CSP-103