added optional subsampling (seqtk) and optional quality filtering (fastp)

Clinical-Genomics-Lund / SomaticPanelPipeline

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Closed ViktorHy closed 1 year ago

ViktorHy commented 1 year ago

support for automatic subsampling

set in params.sample and params.sample_value. If sample == true subsample to sample_value

support for fastp quality trimming