Clinical-Genomics-Lund / SomaticPanelPipeline

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Complete modulization of configs #20

Closed ViktorHy closed 8 months ago

ViktorHy commented 10 months ago

Move configs out of modules and into config-modules

All resource allocation should go into: base_config.nf

  1. Use withLabel
  2. Add labels to modules corresponding to a reasonable resource allocation

Subworkflow configs go into other modules:

  1. Use withName
  2. publishDirs go here for relevant processes
  3. container allocations go here

For instance create_cnv_pon.nf has resource allocation put into it. Use base_config.nf labels to achieve this but keep publishdirs and containers.

ramsainanduri commented 9 months ago

On it