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Clinical-Genomics-Lund / SomaticPanelPipeline

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Create a json import of CNVs #25

Open ViktorHy opened 10 months ago

ViktorHy commented 10 months ago

As of now, import to coyote uses a bed-based import file for CNVs. It uses positional based information, and is very prone to errors. The import-script as well as the coyote_segmentator.pl must be updated to create a better loading operation

ViktorHy commented 10 months ago

We could also look into converting the import-script to python.

ViktorHy commented 9 months ago

I'm looking into this now. Will start with a CNV-json and continue with the importscript