Clinical-Genomics-Lund / SomaticPanelPipeline

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save all qc in json #29

Open ViktorHy opened 9 months ago

ViktorHy commented 9 months ago

Right now sentieon_qc.pl saves specific data-points into a json.

The data is collected from various files and some of it is recalculated and sometimes renamed.

Suggestion, since everytime we get asked to add new QC-value we need to add them into the json. Instead just collect all values from all output-files from sentieon_qc and save into json. We still can control what is presented in CDM via configs (which we already do). Better to save all data than to not.

ViktorHy commented 9 months ago

Also save values as integers/floats and not strings