CNV import to coyote as JSON. Pythonize the import

Clinical-Genomics-Lund / SomaticPanelPipeline

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CNV import to coyote as JSON. Pythonize the import #37

Closed ViktorHy closed 3 months ago

ViktorHy commented 9 months ago

This is just a draft:

cnvJSON.py will generate a JSON file that can be loaded into to coyote. This should remove the positional requirements that the bed-like output from CNVs atm.

the coyote import-script will move over to python and have more tests and checks