ViktorHy
commented
1 year ago added some fallback for the inevitable case where there are no variants in paired samples after gnomad + normal filtering
Closed ViktorHy closed 1 year ago
ViktorHy
commented
1 year ago added some fallback for the inevitable case where there are no variants in paired samples after gnomad + normal filtering
Added a process to calculate contamination of samples. Will produce values to load into CDM via middleman, plots of AF distributions and suggested genotypes of contaminant.