CMD QC import - Githubissues

Clinical-Genomics-Lund / SomaticPanelPipeline

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CMD QC import #52

Closed ramsainanduri closed 5 months ago

ramsainanduri commented 5 months ago

Currently in the production the flag to add sequencing run is given as --run-folder but in the new dsl2 we are giving it as --sequencing-run, there by causing the error in the import for the run folder in CDM.

Should we change that?

ramsainanduri commented 5 months ago

It is fixed by nameing the output files from .cdm to .cdmpy