There are cases in the lab where the samples are mixed up, which causes further issues in the pipeline and analysis. We want our workflow to catch this mix-up earlier in the pipelines. To this end, lab have implemented rsID based fingerprinting of the samples.
@A97paupic have developed, provided and changed perl script that can take the bam files and now from the snp id provide sample percent identity that could be used to access the sample identity. This could already go in the qc workflow and provide a qualitative results.
We need to intergrate the rsID analysis in the pipeline.
There are cases in the lab where the samples are mixed up, which causes further issues in the pipeline and analysis. We want our workflow to catch this mix-up earlier in the pipelines. To this end, lab have implemented rsID based fingerprinting of the samples.
@A97paupic have developed, provided and changed perl script that can take the bam files and now from the snp id provide sample percent identity that could be used to access the sample identity. This could already go in the qc workflow and provide a qualitative results.
We need to intergrate the rsID analysis in the pipeline.