Clinical-Genomics-Lund / SomaticPanelPipeline

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Add subpanel to coyoteimport #6

Closed ViktorHy closed 1 year ago

ViktorHy commented 1 year ago

I have added meta-information to the coyote import process.

In the csv we get information about diagnosis of the sample. This information comes from the clarity export and has a translation.dict. For instance paired samples usually take the value hem, and unpaired samples can take different values, such as Riktad, MPN and KLL.

This was done in an effort to support a the new function, the diagnosis-field which is presented in the list_samples.html (case overview). This will help geneticists to easier detect samples that require urgent interpretation.

ViktorHy commented 1 year ago

@sailepradh

sailepradh commented 1 year ago

It seems logical.

ViktorHy commented 1 year ago

@sailepradh don't close it please =). I want to merge to master when it's done

ViktorHy commented 1 year ago

just approve, and then I can merge