For copy-number neutral deletions present regions of LOH in someway. This is in theory already calculated via HRD-scoring. Perhaps cnvkit or some other specialized tool could provide us with this. Could be presented as regions in the CNV part and/or as plot. For plot, either a separate or as an overlay to the existing plot
For copy-number neutral deletions present regions of LOH in someway. This is in theory already calculated via HRD-scoring. Perhaps cnvkit or some other specialized tool could provide us with this. Could be presented as regions in the CNV part and/or as plot. For plot, either a separate or as an overlay to the existing plot