add support for new register_sample.py

Clinical-Genomics-Lund / SomaticPanelPipeline

0 stars 2 forks source link

Closed ViktorHy closed 11 months ago

ViktorHy commented 1 year ago

need to do:

change CDM-process in pipeline to use sequencing_run from CSV instead of run-id regex mess
- maybe also use the tumor/normal flags in the new register_sample.py
- add lims-id to import
add CSV-header to all affected assays
- PARP-inhib
- myeloid
- lymph?
update old CDM entries?

ViktorHy commented 11 months ago

this is done already