Clinical-Genomics / BALSAMIC

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
https://balsamic.readthedocs.io/
MIT License
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Visualising/trending GC dropout in Balsamic for TGA data #1156

Open annaengstrom opened 1 year ago

annaengstrom commented 1 year ago

Is your feature request related to a problem? Please describe. Sometimes we have issue with GC dropout but we do not trend this so we cannot improve our analysis (wetlab). We get GC dropout for target enrichment (TGA) data but only from picardtools.

Describe the solution you'd like It would be nice to be able to get an overview of how the GC dropout varies over the targeted regions, this could also differ from different capture panels

Describe alternatives you've considered If possible, a clear and concise description of any alternative solutions or features you've considered.

Additional context If possible, add any other context or screenshots about the feature request here.

Expected output for the feature If possible, an example of expected output

Current BALSAMIC version balsamic --version

annaengstrom commented 1 year ago

@vwirta please add/adjust if needed