Clinical-Genomics / BALSAMIC

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
https://balsamic.readthedocs.io/
MIT License
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[Maintenance] Standardise bait set and capture kit terminology #1476

Open mathiasbio opened 2 months ago

mathiasbio commented 2 months ago

Task

In this internal revision an effort has been made to standardise terminology for panel, bait-set and capture kit. To choose one name when possible to avoid confusion.

issue: https://github.com/Clinical-Genomics/Lab-Production/issues/600

We have multiple places in balsamic where capture kit and bait set seems to be used interchangeably when referring to bed-files.

Suggested approach

Select one terminology to use and refactor code to use it. I personally prefer the word bait-set over capture-kit. But we could have a vote!

Deviation

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Risk assessment

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System requirements assessed

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annaengstrom commented 2 months ago

We will decide later in the production meeting which terms to use. We could invite people for this meeting.