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Clinical-Genomics / BALSAMIC

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
https://balsamic.readthedocs.io/
MIT License
44 stars 16 forks source link

Check that tumor samples come from the same individual #300

Closed northwestwitch closed 1 year ago

northwestwitch commented 4 years ago

Customer request from the Scout user meeting of March 4rth: https://github.com/Clinical-Genomics/scout/issues/1679

hassanfa commented 4 years ago

Issue 300!

image

hassanfa commented 3 years ago

updates from cancer bioinfo meeting:

Check sample is from same individual:

  1. Look into external softwares that do this (example GATK or Picard)
  2. Simple germline mutation matching
hassanfa commented 3 years ago

Solution: https://github.com/brentp/somalier

Only useful in tumor-normal analysis.

ashwini06 commented 2 years ago

To Do in Project planning for upcoming quarter https://github.com/Clinical-Genomics/project-planning/issues/369

fevac commented 1 year ago

Taken care on:

pbiology commented 1 year ago

duplicate of https://github.com/Clinical-Genomics/project-planning/issues/375