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Clinical-Genomics / GeneLists

Scripts to automate the handling of gene lists
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Header delimiter #17

Closed ingkebil closed 9 years ago

ingkebil commented 9 years ago 
##Database=<ID=cust002-ATX.txt,Version=40.2,Date=20150429,Acronym=ATX,Complete_name=Neutropenia, Spastic Paraplegia, Ataxia,Clinical_db_genome_build=GRCh37.p13

The delimiter for the description messes with the delimiter of the Clinical_genome_build. What characters are allowed in this header?

ping @henrikstranneheim

henrikstranneheim commented 9 years ago

Avoid “=“ and “,” and it should be fine.

We can change this to other symbols for the next update, if this is a problem.

/H

On 10 May 2015, at 19:32, Kenny Billiau notifications@github.com wrote:

Database=<ID=cust002-ATX.txt,Version=40.2,Date=20150429,Acronym=ATX,Complete_name=Neutropenia, Spastic Paraplegia, Ataxia,Clinical_db_genome_build=GRCh37.p13

The delimiter for the description messes with the delimiter of the Clinical_genome_build. What characters are allowed in this header?

ping @henrikstranneheim

— Reply to this email directly or view it on GitHub.

Henrik Stranneheim Ph.D. Department of Molecular Medicine and Surgery Karolinska Institute Science for Life Laboratory

E-mail: henrik.stranneheim@scilifelab.se Visiting address: Science for Life Laboratories - SciLifeLab Gamma building Tomtebodavägen 23A Delivery address: Science for Life Laboratories - SciLifeLab Gamma building Tomtebodavägen 23B 171 65 Solna

ingkebil commented 9 years ago

I just removed those symbols for now. It is only a description field, nothing that is used for automation.