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Clinical-Genomics / GeneLists

Scripts to automate the handling of gene lists
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Meta data headers have wrong acronym #22

Closed ingkebil closed 9 years ago

ingkebil commented 9 years ago

When assembling the clinical master list, the meta data headers get the wrong acronym:

e.g. `##Database=<ID=###-SKD.txt,Version=46.0,Date=20150903,Acronym=OMIM,Complete_name=Online Mendelian Inheritance in Man of 20150606,Clinical_db_genome_build=GRCh37.p13

Database=<ID=###-SKD.txt,Version=46.0,Date=20150903,Acronym=SKD,Complete_name=Skeletal dysplasia,Clinical_db_genome_build=GRCh37.p13

Database=<ID=###-MOYA.txt,Version=44.10,Date=20150609,Acronym=OMIM,Complete_name=Online Mendelian Inheritance in Man of 20150606,Clinical_db_genome_build=GRCh37.p13

Database=<ID=###-SCN.txt,Version=44.17,Date=20150609,Acronym=OMIM,Complete_name=Online Mendelian Inheritance in Man of 20150606,Clinical_db_genome_build=GRCh37.p13

Database=<ID=###-SHANK1.txt,Version=44.18,Date=20150609,Acronym=OMIM,Complete_name=Online Mendelian Inheritance in Man of 20150606,Clinical_db_genome_build=GRCh37.p13

`

ingkebil commented 9 years ago

The problems stems from most lists including OMIM. So, the headers are not wrong perse, they are just adding OMIM for each list as well.