Clinical-Genomics / Janus

Repository to collect, parse and ship of multiqc data from housekeeper to cg.
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add(add balsamic parsing) #8

Closed ChrOertlin closed 9 months ago

ChrOertlin commented 9 months ago

Description

Adds parsing of multiqc files for the balsamic workflow.

ChrOertlin commented 9 months ago

Nice! 🚀

Is the plan to dump raw metrics documents against this API and is the logic in this PR intended to parse and store those raw documents specifically for balsamic?

Almost, this api will receive file paths and tags, the internal logic then fetches and parses these files and returns the a model that should be read directly onto arnold.

Also, in future we will add other pipelines to this. Rna fusion will be next, then Rare-disease once it is ready etc.

ChrOertlin commented 9 months ago

Ignoring black - ran it locally with same settings still complaining...