Update programs for MIP version 10

[henrikstranneheim]

Tools

• [x] bwamem (no source update release)
• [x] bwa-mem2 - AJ
• [x] cnvnator (no source update release)
• [x] cyrius
• [x] expansionhunter (no source update release)
• [x] fastqc (no source update release)
• [x] GATK
• [x] htslib
• [x] manta (no source update release)
• [x] picard
• [x] sambamba
• [x] smncopynumbercaller
• [x] star - AJ
• [x] star-fusion - RN
• [x] arriba -AJ
• [x] salmon - AJ
• [x] svdb
• [x] telomerecat (HS; fails willl let it sit for a while and we migth skip updating )
• [x] tiddit
• [x] vcfanno (no source update release)
• [x] vcf2cytosure (no source update release)
• [x] VEP

[jemten]

I think this is done. Providing nothing new has been released in the last few day