Clinical-Genomics / MIP

Mutation Identification Pipeline. Read the latest documentation:
https://clinical-genomics.gitbook.io/project-mip/
MIT License
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Verify version collect in the RNA pipe #1827

Closed jemten closed 3 years ago

ramprasadn commented 3 years ago

Output from versioncollect

chanjo: 4.6.0
inner_distance.py: 4.0.0
trim_galore: 0.6.4
rhocall: 0.5.1
samtools: 1.10 (using htslib 1.10.2)
bam_stat.py: 4.0.0
salmon: 1.4.0
multiqc: 1.10.1
sambamba: 0.6.8
genmod: 3.7.3
telomerecat: 3.4.0
plink2: v1.90p 64-bit (25 Mar 2016)
arriba: 2.1.0
pigz: 2.3.4
TIDDIT.py: 2.12.1
picard: 2.25.0-SNAPSHOT
vcfanno: 0.3.2
vcf2cytosure: 0.5.1
geneBody_coverage2.py: 4.0.0
junction_annotation.py: 4.0.0
svdb: 2.4.0,
stranger: 0.7.1
configManta.py: 1.6.0
stringtie: 2.1.3b
vep: 103
preseq: 3.1.1
tabix: 1.10.2
bgzip: 1.10.2
STAR-Fusion: 1.10.0
upd: 0.1
bwa: 0.7.17-r1188
bedtools: v2.30.0
read_duplication.py: 4.0.0
STAR: 2.7.8a
read_distribution.py: 4.0.0
mip: 10.0.0
ExpansionHunter: v4.0.2
fastqc: v0.11.9
gatk: v4.2.0.0
varg: 1.6.7
bam2wig.py: 4.0.0
peddy: 0.4.3
bcftools: 1.10.2 (using htslib 1.10.2)
wigToBigWig: 4
gffcompare: 0.11.2

Versioncollect works as expected hence, closing this issue.