search

Clinical-Genomics / MUTANT

Microbial Utility Toolbox And wrapper for data traNsmission and Transformation
GNU General Public License v3.0
0 stars 1 forks source link

Automate VOC updates #118

Open talnor opened 3 years ago

talnor commented 3 years ago

What needs to be done: VOCs and spike mutations should always reflect the latest definitions by ECDC.

Definitions are available here:

Suggestions on how to get it done: TBD. Small parsing script written already. Can we run it in github actions maybe?

What are the arguments for getting it done:

Task is considered finished when:

sofstam commented 3 years ago

@talnor good idea! We can test to run the parsing script with a cron job and gh action

henrikstranneheim commented 3 years ago

@sofstam We are trying to move away from cron jobs and use systemd services instead. See, https://atlas.scilifelab.se/infrastructure/development/development/#systemd, http://systemd.io/ and https://en.wikipedia.org/wiki/Systemd

sofstam commented 3 years ago

@henrikstranneheim Thank you for the clarification :)