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Internal server error #118

Closed AnnHam closed 4 years ago

AnnHam commented 4 years ago

The FF tab in the NIPT viewer does not work. Produces a "internal server error" message. Seems to influence all batches.

mayabrandi commented 4 years ago

Okej. Ill have a look tomorrow.

/Maya

28 jan. 2020 kl. 11:51 skrev AnnHam notifications@github.com:

The FF tab in the NIPT viewer does not work. Produces a "internal server error" message. Seems to influence all batches.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/Clinical-Genomics/NIPT/issues/118?email_source=notifications&email_token=AAJ65XPZTNYAQX2LEJGFHT3RAAE4TA5CNFSM4KMQJHKKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4IJF3FOA, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAJ65XKV5LEWFE3JE4PHF2LRAAE4TANCNFSM4KMQJHKA.

mayabrandi commented 4 years ago

The issue is that recently the value <1 has started to come in to the FF column in the database. The issue was brought up earlier by Maria (CCd). It can be handled in the code by automatically replacing <1 with 1 or something. But I have been waiting for Maria to discuss this with the NIPT-experts. I can go in to the database and manually fix the samples that have FF <1 if you want me to. But we need a more sustainable solution of course :) Waiting for reply from Maria!

Best regards,

Maya

28 jan. 2020 kl. 11:51 skrev AnnHam notifications@github.com:

The FF tab in the NIPT viewer does not work. Produces a "internal server error" message. Seems to influence all batches.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/Clinical-Genomics/NIPT/issues/118?email_source=notifications&email_token=AAJ65XPZTNYAQX2LEJGFHT3RAAE4TA5CNFSM4KMQJHKKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4IJF3FOA, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAJ65XKV5LEWFE3JE4PHF2LRAAE4TANCNFSM4KMQJHKA.

mayabrandi commented 4 years ago

Hi Maya,

Sorry, I had totally forgotten about this. We have now discussed it. Is it possible to by default automatically set all the values that are <1 to 0 instead from now on? That would be the best solution.

Best regards Maria

Maria Pettersson | MSc PhD Associate clinical laboratory geneticist, Clinical Genetics Unit L5:03 Karolinska University Hospital Solna Sweden

Från: Maya Brandi maya.brandi@scilifelab.se Skickat: den 29 januari 2020 14:03 Till: Clinical-Genomics/NIPT reply@reply.github.com; Maria Pettersson maria.pettersson.1@ki.se Kopia: Clinical-Genomics/NIPT NIPT@noreply.github.com; Subscribed subscribed@noreply.github.com Ämne: Re: [Clinical-Genomics/NIPT] Internal server error (#118)

The issue is that recently the value <1 has started to come in to the FF column in the database. The issue was brought up earlier by Maria (CCd). It can be handled in the code by automatically replacing <1 with 1 or something. But I have been waiting for Maria to discuss this with the NIPT-experts. I can go in to the database and manually fix the samples that have FF <1 if you want me to. But we need a more sustainable solution of course :) Waiting for reply from Maria!

Best regards,

Maya

28 jan. 2020 kl. 11:51 skrev AnnHam notifications@github.com<mailto:notifications@github.com>:

The FF tab in the NIPT viewer does not work. Produces a "internal server error" message. Seems to influence all batches. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FClinical-Genomics%2FNIPT%2Fissues%2F118%3Femail_source%3Dnotifications%26email_token%3DAAJ65XPZTNYAQX2LEJGFHT3RAAE4TA5CNFSM4KMQJHKKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4IJF3FOA&data=02%7C01%7Cmaria.pettersson.1%40ki.se%7C57a5a655977e4038120308d7a4bb8ac1%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637158997718504237&sdata=5FKlVqHyOZayMOX0MFF7GR%2Bj2Da3uwZceXI4y187pLQ%3D&reserved=0, or unsubscribehttps://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAAJ65XKV5LEWFE3JE4PHF2LRAAE4TANCNFSM4KMQJHKA&data=02%7C01%7Cmaria.pettersson.1%40ki.se%7C57a5a655977e4038120308d7a4bb8ac1%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637158997718504237&sdata=jPXMat1iTzK7p3LozIMVEj%2FjMgzbeA7fPqgy5LUDILs%3D&reserved=0.

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mayabrandi commented 4 years ago

Yep! No problem. Ill do it manually for the once that are already in the database right now. And ill update the code for it tomorrow or on monday. If the error occurs again, its probably because I didn’t get time to fix it before new samples were loaded. Hopefully that will not happen. But if it does, just email me.

Ill let you know when the code is updated.

Best,

maya

29 jan. 2020 kl. 14:20 skrev Maria Pettersson maria.pettersson.1@ki.se:

Hi Maya,

Sorry, I had totally forgotten about this. We have now discussed it. Is it possible to by default automatically set all the values that are <1 to 0 instead from now on? That would be the best solution.

Best regards Maria

Maria Pettersson | MSc PhD Associate clinical laboratory geneticist, Clinical Genetics Unit L5:03 Karolinska University Hospital Solna Sweden

Från: Maya Brandi <maya.brandi@scilifelab.se mailto:maya.brandi@scilifelab.se> Skickat: den 29 januari 2020 14:03 Till: Clinical-Genomics/NIPT <reply@reply.github.com mailto:reply@reply.github.com>; Maria Pettersson <maria.pettersson.1@ki.se mailto:maria.pettersson.1@ki.se> Kopia: Clinical-Genomics/NIPT <NIPT@noreply.github.com mailto:NIPT@noreply.github.com>; Subscribed <subscribed@noreply.github.com mailto:subscribed@noreply.github.com> Ämne: Re: [Clinical-Genomics/NIPT] Internal server error (#118)

The issue is that recently the value <1 has started to come in to the FF column in the database. The issue was brought up earlier by Maria (CCd). It can be handled in the code by automatically replacing <1 with 1 or something. But I have been waiting for Maria to discuss this with the NIPT-experts. I can go in to the database and manually fix the samples that have FF <1 if you want me to. But we need a more sustainable solution of course :) Waiting for reply from Maria!

Best regards,

Maya

28 jan. 2020 kl. 11:51 skrev AnnHam <notifications@github.com mailto:notifications@github.com>:

The FF tab in the NIPT viewer does not work. Produces a "internal server error" message. Seems to influence all batches. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FClinical-Genomics%2FNIPT%2Fissues%2F118%3Femail_source%3Dnotifications%26email_token%3DAAJ65XPZTNYAQX2LEJGFHT3RAAE4TA5CNFSM4KMQJHKKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4IJF3FOA&data=02%7C01%7Cmaria.pettersson.1%40ki.se%7C57a5a655977e4038120308d7a4bb8ac1%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637158997718504237&sdata=5FKlVqHyOZayMOX0MFF7GR%2Bj2Da3uwZceXI4y187pLQ%3D&reserved=0, or unsubscribe https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAAJ65XKV5LEWFE3JE4PHF2LRAAE4TANCNFSM4KMQJHKA&data=02%7C01%7Cmaria.pettersson.1%40ki.se%7C57a5a655977e4038120308d7a4bb8ac1%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637158997718504237&sdata=jPXMat1iTzK7p3LozIMVEj%2FjMgzbeA7fPqgy5LUDILs%3D&reserved=0.

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mayabrandi commented 4 years ago

Excellent, thank you so much Maya!

Best regards Maria

Maria Pettersson | MSc PhD Associate clinical laboratory geneticist, Clinical Genetics Unit L5:03 Karolinska University Hospital Solna Sweden

Från: Maya Brandi maya.brandi@scilifelab.se Skickat: den 29 januari 2020 14:24 Till: Maria Pettersson maria.pettersson.1@ki.se Kopia: Clinical-Genomics/NIPT reply@reply.github.com; Clinical-Genomics/NIPT NIPT@noreply.github.com; Subscribed subscribed@noreply.github.com Ämne: Re: [Clinical-Genomics/NIPT] Internal server error (#118)

Yep! No problem. Ill do it manually for the once that are already in the database right now. And ill update the code for it tomorrow or on monday. If the error occurs again, its probably because I didn’t get time to fix it before new samples were loaded. Hopefully that will not happen. But if it does, just email me.

Ill let you know when the code is updated.

Best,

maya

29 jan. 2020 kl. 14:20 skrev Maria Pettersson maria.pettersson.1@ki.se<mailto:maria.pettersson.1@ki.se>:

Hi Maya,

Sorry, I had totally forgotten about this. We have now discussed it. Is it possible to by default automatically set all the values that are <1 to 0 instead from now on? That would be the best solution.

Best regards Maria

Maria Pettersson | MSc PhD Associate clinical laboratory geneticist, Clinical Genetics Unit L5:03 Karolinska University Hospital Solna Sweden

Från: Maya Brandi maya.brandi@scilifelab.se<mailto:maya.brandi@scilifelab.se> Skickat: den 29 januari 2020 14:03 Till: Clinical-Genomics/NIPT reply@reply.github.com<mailto:reply@reply.github.com>; Maria Pettersson maria.pettersson.1@ki.se<mailto:maria.pettersson.1@ki.se> Kopia: Clinical-Genomics/NIPT NIPT@noreply.github.com<mailto:NIPT@noreply.github.com>; Subscribed subscribed@noreply.github.com<mailto:subscribed@noreply.github.com> Ämne: Re: [Clinical-Genomics/NIPT] Internal server error (#118)

The issue is that recently the value <1 has started to come in to the FF column in the database. The issue was brought up earlier by Maria (CCd). It can be handled in the code by automatically replacing <1 with 1 or something. But I have been waiting for Maria to discuss this with the NIPT-experts. I can go in to the database and manually fix the samples that have FF <1 if you want me to. But we need a more sustainable solution of course :) Waiting for reply from Maria!

Best regards,

Maya

28 jan. 2020 kl. 11:51 skrev AnnHam notifications@github.com<mailto:notifications@github.com>:

The FF tab in the NIPT viewer does not work. Produces a "internal server error" message. Seems to influence all batches. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FClinical-Genomics%2FNIPT%2Fissues%2F118%3Femail_source%3Dnotifications%26email_token%3DAAJ65XPZTNYAQX2LEJGFHT3RAAE4TA5CNFSM4KMQJHKKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4IJF3FOA&data=02%7C01%7Cmaria.pettersson.1%40ki.se%7C267d9321f5b74b597e8808d7a4be7980%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637159010938243425&sdata=BxkH3ICKOu3GF3Pm0YBgzrw35ktnPEQCt9RRgaFpNzk%3D&reserved=0, or unsubscribehttps://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAAJ65XKV5LEWFE3JE4PHF2LRAAE4TANCNFSM4KMQJHKA&data=02%7C01%7Cmaria.pettersson.1%40ki.se%7C267d9321f5b74b597e8808d7a4be7980%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637159010938253423&sdata=tz3WxGNzgh7YGj0eD3iWRgWoj5cE%2F4C3gBanatrao78%3D&reserved=0.

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mayabrandi commented 4 years ago

The plots are now visible again.

29 jan. 2020 kl. 14:26 skrev Maria Pettersson maria.pettersson.1@ki.se:

Excellent, thank you so much Maya!

Best regards Maria

Maria Pettersson | MSc PhD Associate clinical laboratory geneticist, Clinical Genetics Unit L5:03 Karolinska University Hospital Solna Sweden

Från: Maya Brandi <maya.brandi@scilifelab.se mailto:maya.brandi@scilifelab.se> Skickat: den 29 januari 2020 14:24 Till: Maria Pettersson <maria.pettersson.1@ki.se mailto:maria.pettersson.1@ki.se> Kopia: Clinical-Genomics/NIPT <reply@reply.github.com mailto:reply@reply.github.com>; Clinical-Genomics/NIPT <NIPT@noreply.github.com mailto:NIPT@noreply.github.com>; Subscribed <subscribed@noreply.github.com mailto:subscribed@noreply.github.com> Ämne: Re: [Clinical-Genomics/NIPT] Internal server error (#118)

Yep! No problem. Ill do it manually for the once that are already in the database right now. And ill update the code for it tomorrow or on monday. If the error occurs again, its probably because I didn’t get time to fix it before new samples were loaded. Hopefully that will not happen. But if it does, just email me.

Ill let you know when the code is updated.

Best,

maya

29 jan. 2020 kl. 14:20 skrev Maria Pettersson <maria.pettersson.1@ki.se mailto:maria.pettersson.1@ki.se>:

Hi Maya,

Sorry, I had totally forgotten about this. We have now discussed it. Is it possible to by default automatically set all the values that are <1 to 0 instead from now on? That would be the best solution.

Best regards Maria

Maria Pettersson | MSc PhD Associate clinical laboratory geneticist, Clinical Genetics Unit L5:03 Karolinska University Hospital Solna Sweden

Från: Maya Brandi <maya.brandi@scilifelab.se mailto:maya.brandi@scilifelab.se> Skickat: den 29 januari 2020 14:03 Till: Clinical-Genomics/NIPT <reply@reply.github.com mailto:reply@reply.github.com>; Maria Pettersson <maria.pettersson.1@ki.se mailto:maria.pettersson.1@ki.se> Kopia: Clinical-Genomics/NIPT <NIPT@noreply.github.com mailto:NIPT@noreply.github.com>; Subscribed <subscribed@noreply.github.com mailto:subscribed@noreply.github.com> Ämne: Re: [Clinical-Genomics/NIPT] Internal server error (#118)

The issue is that recently the value <1 has started to come in to the FF column in the database. The issue was brought up earlier by Maria (CCd). It can be handled in the code by automatically replacing <1 with 1 or something. But I have been waiting for Maria to discuss this with the NIPT-experts. I can go in to the database and manually fix the samples that have FF <1 if you want me to. But we need a more sustainable solution of course :) Waiting for reply from Maria!

Best regards,

Maya

28 jan. 2020 kl. 11:51 skrev AnnHam <notifications@github.com mailto:notifications@github.com>:

The FF tab in the NIPT viewer does not work. Produces a "internal server error" message. Seems to influence all batches. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FClinical-Genomics%2FNIPT%2Fissues%2F118%3Femail_source%3Dnotifications%26email_token%3DAAJ65XPZTNYAQX2LEJGFHT3RAAE4TA5CNFSM4KMQJHKKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4IJF3FOA&data=02%7C01%7Cmaria.pettersson.1%40ki.se%7C267d9321f5b74b597e8808d7a4be7980%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637159010938243425&sdata=BxkH3ICKOu3GF3Pm0YBgzrw35ktnPEQCt9RRgaFpNzk%3D&reserved=0, or unsubscribe https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAAJ65XKV5LEWFE3JE4PHF2LRAAE4TANCNFSM4KMQJHKA&data=02%7C01%7Cmaria.pettersson.1%40ki.se%7C267d9321f5b74b597e8808d7a4be7980%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637159010938253423&sdata=tz3WxGNzgh7YGj0eD3iWRgWoj5cE%2F4C3gBanatrao78%3D&reserved=0.

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mayabrandi commented 4 years ago

I have now updated the code (<1% is now being translated to 1%). The problem should not appear again.

Best,

Maya

29 jan. 2020 kl. 14:26 skrev Maria Pettersson maria.pettersson.1@ki.se:

Excellent, thank you so much Maya!

Best regards Maria

Maria Pettersson | MSc PhD Associate clinical laboratory geneticist, Clinical Genetics Unit L5:03 Karolinska University Hospital Solna Sweden

Från: Maya Brandi <maya.brandi@scilifelab.se mailto:maya.brandi@scilifelab.se> Skickat: den 29 januari 2020 14:24 Till: Maria Pettersson maria.pettersson.1@ki.se Kopia: Clinical-Genomics/NIPT reply@reply.github.com; Clinical-Genomics/NIPT NIPT@noreply.github.com; Subscribed subscribed@noreply.github.com Ämne: Re: [Clinical-Genomics/NIPT] Internal server error (#118)

Yep! No problem. Ill do it manually for the once that are already in the database right now. And ill update the code for it tomorrow or on monday. If the error occurs again, its probably because I didn’t get time to fix it before new samples were loaded. Hopefully that will not happen. But if it does, just email me.

Ill let you know when the code is updated.

Best,

maya

29 jan. 2020 kl. 14:20 skrev Maria Pettersson <maria.pettersson.1@ki.se mailto:maria.pettersson.1@ki.se>:

Hi Maya,

Sorry, I had totally forgotten about this. We have now discussed it. Is it possible to by default automatically set all the values that are <1 to 0 instead from now on? That would be the best solution.

Best regards Maria

Maria Pettersson | MSc PhD Associate clinical laboratory geneticist, Clinical Genetics Unit L5:03 Karolinska University Hospital Solna Sweden

Från: Maya Brandi <maya.brandi@scilifelab.se mailto:maya.brandi@scilifelab.se> Skickat: den 29 januari 2020 14:03 Till: Clinical-Genomics/NIPT <reply@reply.github.com mailto:reply@reply.github.com>; Maria Pettersson <maria.pettersson.1@ki.se mailto:maria.pettersson.1@ki.se> Kopia: Clinical-Genomics/NIPT <NIPT@noreply.github.com mailto:NIPT@noreply.github.com>; Subscribed <subscribed@noreply.github.com mailto:subscribed@noreply.github.com> Ämne: Re: [Clinical-Genomics/NIPT] Internal server error (#118)

The issue is that recently the value <1 has started to come in to the FF column in the database. The issue was brought up earlier by Maria (CCd). It can be handled in the code by automatically replacing <1 with 1 or something. But I have been waiting for Maria to discuss this with the NIPT-experts. I can go in to the database and manually fix the samples that have FF <1 if you want me to. But we need a more sustainable solution of course :) Waiting for reply from Maria!

Best regards,

Maya

28 jan. 2020 kl. 11:51 skrev AnnHam <notifications@github.com mailto:notifications@github.com>:

The FF tab in the NIPT viewer does not work. Produces a "internal server error" message. Seems to influence all batches. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FClinical-Genomics%2FNIPT%2Fissues%2F118%3Femail_source%3Dnotifications%26email_token%3DAAJ65XPZTNYAQX2LEJGFHT3RAAE4TA5CNFSM4KMQJHKKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4IJF3FOA&data=02%7C01%7Cmaria.pettersson.1%40ki.se%7C267d9321f5b74b597e8808d7a4be7980%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637159010938243425&sdata=BxkH3ICKOu3GF3Pm0YBgzrw35ktnPEQCt9RRgaFpNzk%3D&reserved=0, or unsubscribe https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAAJ65XKV5LEWFE3JE4PHF2LRAAE4TANCNFSM4KMQJHKA&data=02%7C01%7Cmaria.pettersson.1%40ki.se%7C267d9321f5b74b597e8808d7a4be7980%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637159010938253423&sdata=tz3WxGNzgh7YGj0eD3iWRgWoj5cE%2F4C3gBanatrao78%3D&reserved=0.

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