The Genotype repository has been partly replaced by Genotype-api. All front-end interactions are done via the new repo. But the upload done on the server is still done via the CLI.
Suggested solution
[ ] Replace the CLI calls in cg/apps/gt.py with API calls
Description
The Genotype repository has been partly replaced by Genotype-api. All front-end interactions are done via the new repo. But the upload done on the server is still done via the CLI.
Suggested solution
cg/apps/gt.py
with API callsThis can be closed when
The old genotype repo is no longer used anywhere