Repeating fixtures

[sofstam]

Description

https://github.com/Clinical-Genomics/cg/pull/2106#discussion_r1289816583

Suggested solution

Rename repeating fixtures and use them in all analyses that need them (rnafusion, balsamic, taxprofiler for now)

• [x] taxprofiler_fastq_file_l_1_r_1
• [x] fixture_rnafusion_fastq_file_l_1_r_2
• [ ] {taxprofiler,rnafusion}_case_id -> case_id
• [x] {taxprofiler,rnafusion}_sample_id
• [ ] {taxprofiler,rnafusion}_dir
• [x] {taxprofiler,rnafusion}_housekeeper_dir
• [x] {taxprofiler,rnafusion}_mock_fastq_files
• [ ] {taxprofiler,rnafusion}_context -> nf_analysis_context

[henrikstranneheim]

@sofstam Are you planning to work on this issue this week?

[sofstam]

@henrikstranneheim yes!

[Vince-janv]

Closing due to inactivity. Reopen and answer the question below if you want this prioritised.

Concerning the proposed feature:

• Who would utilise this feature?
• How much time would be saved weekly?