Closed seallard closed 5 days ago
For first refinement:
For subsequent refinement:
Do we want to do this? Gain: simplified logic in processing flow for flow cells, regardless of machine type.
How much effort would it be? A lot of logic depends on the current structure.
Refine further once higher prioritised projects are completed.
No clear gain and will not be prioritized or done soon.
Description
Maintaining two directories for flow cell data complicates the data flow and logic for processing flow cells. There's a need to simplify this structure.
Note: the backup logic would need to be adjusted as to not backup both raw and converted data.
Suggested solution
Merge the two directories (/home/proj/production/flowcells and /home/proj/production/demultiplexed-runs) into a single location, ensuring data consistency and simplified processing flow.
/home/proj/production/flowcells
only/home/proj/production/demultiplexed-runs
to exist/home/proj/production/demultiplexed-runs
This can be closed when
We have a single location for flow cell data
Blocked by
Supporting the new novaseqx machines has higher prio