Bug: Raredisease workflow not storing Clinical STRs variants file

Clinical-Genomics / cg

Glue between Clinical Genomics apps

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Bug: Raredisease workflow not storing Clinical STRs variants file #3471

Open ivadym opened 1 month ago

ivadym commented 1 month ago

Describe the bug

This file is currently being uploaded to Scout for MIP. However, it doesn't seem to be stored for the Raredisease pipeline.

rannick commented 1 month ago

Should be this file: PATHTOCASE/repeat_expansions/SAMPLEID_repeat_expansion.vcf Added to hermes with tags: [BioinfoToolsTags.EXPANSIONHUNTER, VariantTags.VCF_STR],