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Clinical-Genomics / cg_lims

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Always add reads for negative controls - NovaSeq X v1 WF #524

Closed karlnyr closed 1 month ago

karlnyr commented 2 months ago

We want to always add the number of reads to negative controls in the in NovaSeq X v1 workflow. We do not need to address the NovaSeq v3 workflow as we do not handle negative controls in this workflow any longer.

For definitions of headings below see Basic Concepts.

Work Flow: NovaSeq X v1 Protocol: NovaSeq X v1 Step: Bcl Conversion & Demultiplexing (NovaSeq X)

We want to always add the number of reads, from previous and current sequencing runs, to a sample in the NovaSeq X v1 WF.

karlnyr commented 2 months ago

Once this issue is closed, we can revert the revert done in: https://github.com/Clinical-Genomics/cg/pull/3689

karlnyr commented 2 months ago

and close https://github.com/Clinical-Genomics/cg/issues/2871

Karl-Svard commented 1 month ago

fixed in https://github.com/Clinical-Genomics/cg_lims/pull/531