Fix projectlog parsing - Githubissues

Clinical-Genomics / cgstats

Models and connecting to clinstatsdb

0 stars 0 forks source link

Fix projectlog parsing #27

Closed barrystokman closed 3 years ago

barrystokman commented 3 years ago

This PR fixes novaseq projectlog parsing on hasta.

How to prepare for test: See https://github.com/Clinical-Genomics/demultiplexing/pull/134

How to test: See https://github.com/Clinical-Genomics/demultiplexing/pull/134

Review:

[x] code approved by @henrikstranneheim
[x] "Merge and deploy" approved by @henrikstranneheim Thanks for filling in who performed the code review and the test!

This version is a:

[x] MINOR - when you add functionality in a backwards compatible manner

⚠️ To be deployed with https://github.com/Clinical-Genomics/demultiplexing/pull/134 and https://github.com/Clinical-Genomics/servers/pull/476 only!

barrystokman commented 3 years ago

It is tested in https://github.com/Clinical-Genomics/demultiplexing/pull/134. Short summary: introducing a dockerized bcl2fastq command required some changes in how the novaseq project log in the demux dir is parsed.

barrystokman commented 3 years ago

Bumped:

Deployed on hasta: