Addition of alternative gene/exon definitions

Clinical-Genomics / chanjo

Chanjo provides a better way to analyze coverage data in clinical sequencing.

https://clinical-genomics.github.io/chanjo/

MIT License

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Addition of alternative gene/exon definitions #43

Closed dgaston closed 10 years ago

dgaston commented 10 years ago

Would allow for greater custom flexibility, especially for amplicon sequencing where intronic regions are targeted.

robinandeer commented 10 years ago

I agree. This was one of the things I had in mind when I did the latest refactoring; to move away from specifically mentioning "genes" etc in the code.

I guess where you would still have to work around the current structure is in the current SQL schema.

I will come back to this issue when I've got an idea on how to proceed.

robinandeer commented 10 years ago

By Chanjo 1.0 it is now possible to design your own intervals (exon), block (transcript), and superblock (gene) definitions.