Derive novaseq basemask from RunParameters.xml

[barrystokman]

This PR adds/fixes ...

How to prepare for test:

• [x] ssh to thalamus
• [ ] install on stage: bash servers/resources/hasta.scilifelab.se/update-demux-stage.sh [THIS-BRANCH-NAME]

How to test:

• [x] login to thalamus
• [x] do bash /home/hiseq.clinical/STAGE/SCRIPTS/git/demultiplexing/scripts/novaseq/checkfornewrun.bash /home/hiseq.clinical/STAGE/novaseq/runs/ /home/hiseq.clinical/STAGE/novaseq/demux/

Expected test outcome:

• [x] bcl2fastq is started with a basemask of Y51,I8,I8,Y51
• [x] Unaligned dir in demux is appended with Y51I8I8Y51
• [x] check that demultiplexing finished correctly
• [x] Take a screenshot and attach or copy/paste the output.

Review:

• [x] code approved by @barrystokman
• [x] tests executed by @barrystokman
• [x] "Merge and deploy" approved by @barrystokman Thanks for filling in who performed the code review and the test!

This version is a:

• [ ] MAJOR - when you make incompatible API changes
• [x] MINOR - when you add functionality in a backwards compatible manner
• [ ] PATCH - when you make backwards compatible bug fixes or documentation/instructions

[barrystokman]

[barrystokman]

Derive basemask for regular novaseq demuxing and NIPT, respectively:

bash /home/hiseq.clinical/STAGE/SCRIPTS/git/demultiplexing/scripts/novaseq/checkfornewrun.bash /home/hiseq.clinical/STAGE/novaseq/runs/ /home/hiseq.clinical/STAGE/novaseq/demux/

[barrystokman]