Sync flowcells from the NASes to hasta instead of thalamus

[barrystokman]

The syncing of flowcells from the NASes to thalamus is handled by lsyncd. Target servers and directories are determined by a config file: /home/hiseq.clinical/config/lsyncd_ssh.config

HiSeq2500 (seq-nas-3 and clinical-nas-1):

settings {
  logfile = "/home/hiseq.clinical/log/lsyncd.log",
  statusFile = "/home/hiseq.clinical/log/lsyncd.status",
  nodaemon = true,
}

sync {
  default.rsyncssh,
  source = "/home/hiseq.clinical/Runs/",
  host = "thalamus.scilifelab.se",
  targetdir = "/home/hiseq.clinical/RUNS/",
  delete=false,
  exclude="Thumbnail_Images"
}

NovaSeq (seq-nas-2, clinical-nas-2, and nas-6):

settings {
  logfile    = "/home/hiseq.clinical/log/lsyncd.log",
  statusFile = "/home/hiseq.clinical/log/lsyncd.status",
  nodaemon   = true,
}

sync {
  default.rsyncssh, 
  source = "/home/hiseq.clinical/Runs/", 
  host = "thalamus.scilifelab.se", 
  targetdir = "/home/hiseq.clinical/novaseq/runs/", 
  delete=false,
  exclude={ "Thumbnail_Images", "*.tmp.cbcl", "*.cbcl.tmp" }
}

Changes required:

• (both machines): host = "thalamus.scilifelab.se" -> host = "hasta.scilifelab.se" (note that on some NASes the host name can be thalamus or clnical-preproc.sclilifelab.se The last one is the actual name of thalamus!
• HiSeq2500: targetdir = "/home/hiseq.clinical/RUNS/" -> /home/proj/production/flowcells/hiseq2500, or another TBD location
• NovaSeq: targetdir = "/home/hiseq.clinical/novaseq/runs/" -> /home/proj/production/flowcells/novaseq, or another TBD location