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Clinical-Genomics / demultiplexing

To keep scripts associated with execution of the Illumina demultiplexing pipeline
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Keep Sequencing files for LIMS longer on Thalamus #127

Closed emmser closed 3 years ago

emmser commented 3 years ago

LIMS are looking at some files in the run-folders when the flow cells are taken through NovaSeq Run step in LIMS. When there have been demux-problems and the flow cells have been demultiplexed again we have ended up in the problem that the runs have been removed from Thalamus before the LIMS-step has been done. LIMS can then not reach the info needed for the step. We want these files to be kept longer on Thalamus.

Files/dirs needed for LIMS: ??? @mayabrandi please help me here InterOp RunInfo.xml RunParameters.xml

mayabrandi commented 3 years ago

I think those are the only once that are needed.

10 dec. 2020 kl. 09:29 skrev Emma Sernstad notifications@github.com:

LIMS are looking at some files in the run-folders when the flow cells are taken through NovaSeq Run step in LIMS. When there have been demux-problems and the flow cells have been demultiplexed again we have ended up in the problem that the runs have been removed from Thalamus before the LIMS-step has been done. LIMS can then not reach the info needed for the step. We want these files to be kept longer on Thalamus.

Files/dirs needed for LIMS: ??? @mayabrandi https://github.com/mayabrandi please help me here InterOp RunInfo.xml RunParameters.xml

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henrikstranneheim commented 3 years ago

We are moving from clincial.preproc and this is not relevant anymore