Demux fetch sheet is not working properly on hasta due to missing file:
[12|90|676] [hiseq.clinical@hasta:~] [P_main] 1 $ demux sheet fetch -a nova HVKJCDRXX
Traceback (most recent call last):
File "${P_demux_path}/bin/demux", line 10, in <module>
sys.exit(demux())
File "${P_demux_path}/lib/python3.7/site-packages/click/core.py", line 722, in __call__
return self.main(*args, **kwargs)
File "${P_demux_path}/lib/python3.7/site-packages/click/core.py", line 697, in main
rv = self.invoke(ctx)
File "${P_demux_path}/lib/python3.7/site-packages/click/core.py", line 1066, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "${P_demux_path}/lib/python3.7/site-packages/click/core.py", line 1066, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "${P_demux_path}/lib/python3.7/site-packages/click/core.py", line 895, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "${P_demux_path}/lib/python3.7/site-packages/click/core.py", line 535, in invoke
return callback(*args, **kwargs)
File "${P_demux_path}/lib/python3.7/site-packages/click/decorators.py", line 17, in new_func
return f(get_current_context(), *args, **kwargs)
File "${P_demux_path}/lib/python3.7/site-packages/demux/cli/samplesheet.py", line 173, in fetch
with open(f"{dir_path}/../../files/20181012_Indices.csv") as csv_file:
FileNotFoundError: [Errno 2] No such file or directory: '${P_demux_path}/lib/python3.7/site-packages/demux/cli/../../files/20181012_Indices.csv'
Fix:
[ ] Place said said in proper place
@barrystokman any reason this file could have been removed?
It's not removed, this was never meant to be run on hasta. The solution for now is to run this command on thalamus. A more robust solution is incoming.
Demux fetch sheet is not working properly on hasta due to missing file:
Fix:
@barrystokman any reason this file could have been removed?