search

Clinical-Genomics / demultiplexing

To keep scripts associated with execution of the Illumina demultiplexing pipeline
5 stars 0 forks source link

WIP Adjust demultiplexing bash scripts so they can run on hasta #132

Closed barrystokman closed 3 years ago

barrystokman commented 3 years ago

scripts involved:

novaseq demux https://github.com/Clinical-Genomics/demultiplexing/blob/master/scripts/novaseq/checkfornewrun.bash https://github.com/Clinical-Genomics/demultiplexing/blob/master/scripts/novaseq/demux-novaseq.bash

2500 demux https://github.com/Clinical-Genomics/demultiplexing/blob/master/scripts/checkfornewrun.bash https://github.com/Clinical-Genomics/demultiplexing/blob/master/scripts/demux.bash

delivery novaseq & 2500 results: https://github.com/Clinical-Genomics/demultiplexing/blob/master/scripts/2-hiseq-deliver.bash

2500 NIPT: https://github.com/Clinical-Genomics/demultiplexing/blob/master/scripts/syncnipt.bash

NIPT viewer?:

Note: best to be picked up together with the crontab settings

henrikstranneheim commented 3 years ago

@barrystokman Done?

barrystokman commented 3 years ago

Yes, closing.