feat(docker): Adds a bcl2fastq docker recipe - Githubissues

Clinical-Genomics / demultiplexing

To keep scripts associated with execution of the Illumina demultiplexing pipeline

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feat(docker): Adds a bcl2fastq docker recipe #133

Closed henrikstranneheim closed 3 years ago

henrikstranneheim commented 3 years ago

This PR adds/fixes:

See above

How to prepare for test:

[x] ssh to hasta
[x] Run: cd /home/proj/development/demux-on-hasta/novaseq/container/

How to test:

[x] Run: singularity exec bcl2fastq_v2-20-0.sif bcl2fastq --help

Expected outcome

[x] The help text for bcl2fastq should be generated

Review:

[x] code approved by BS, KN
[x] tests executed by HS
[x] "Merge" approved by BS, KN Thanks for filling in who performed the code review and the test!

This version is a:

[ ] MAJOR - when you make incompatible API changes
[ ] MINOR - when you add functionality in a backwards compatible manner
[x] PATCH - when you make backwards compatible bug fixes or documentation/instructions

henrikstranneheim commented 3 years ago

How to test:

[x] Run: singularity exec bcl2fastq_v2-20-0.sif bcl2fastq --help

Screenshot 2021-01-07 at 08 21 11

Expected outcome

[x] The help text for bcl2fastq should be generated