Closed barrystokman closed 3 years ago
Only undetermined fastqs:
demux sheet convert /home/proj/stage/flowcells/2500/runs/140818_D00410_0089_AH9M8MADXX/SampleSheet.csv
:
Preconditions cgstats select H9M8MADXX
:
Post demux cgstats select H9M8MADXX
:
Comparison post demux cgstats select H9M8MADXX
in P_main
:
Bumped:
This PR adds conversion of old 2500 sample sheets so demuxing and cgstats works on Hasta.
How to prepare for test:
bash servers/resources/hasta.scilifelab.se/update-demux-stage.sh [THIS-BRANCH-NAME]
How to test:
rsync -av /home/proj/production/flowcells/2500/runs/140818_D00410_0089_AH9M8MADXX /home/proj/stage/flowcells/2500/runs/
/home/proj/stage/flowcells/2500/runs/
have ademuxstarted.txt
EXCEPT140818_D00410_0089_AH9M8MADXX
bash /home/proj/stage/bin/git/demultiplexing/scripts/2500/stage/checkfornewrun.bash /home/proj/stage/flowcells/2500/runs/ /home/proj/stage/demultiplexed-runs/ &>> /home/proj/stage/logs/checkfornewrun.2500.log
Expected test outcome:
/home/proj/stage/logs/checkfornewrun.2500.log
and/home/proj/stage/demultiplexed-runs/140818_D00410_0089_AH9M8MADXX/projectlog.*.log
for errors and inconsistenciesReview:
This version is a: