Add Y to base mask

[moahaegglund]

Updating the base mask as we get an error message in demultiplexing right now: "UseBasesMask formatting error. Use base mask must start with either a 'y', 'i', or 'n'. Use base mask: '151'".

How to prepare for test:

• [x] ssh to hasta
• [x] paxa
• [x] install on stage: bash /home/proj/stage/servers/resources/hasta.scilifelab.se/update-demux-stage.sh Add-Y-to-base-mask

How to test:

• [x] demux basemask create -l 8 -a wgs /home/proj/stage/flowcells/hiseqx/181130_ST-E00269_0322_AHVCFMCCXY/

Expected test outcome:

• [x] check that the generated base mask is Y151,I8,Y151
• [x] Take a screenshot and attach or copy/paste the output.

Review:

• [x] code approved by @barrystokman
• [x] tests executed by @moahaegglund
• [x] "Merge and deploy" approved by @barrystokman Thanks for filling in who performed the code review and the test!

This version is a:

• [x] PATCH - when you make backwards compatible bug fixes or documentation/instructions

[moahaegglund]

Tests executed,

[barrystokman]

This was PR was made and approved today and not merged and deployed yet

[karlnyr]

This was PR was made and approved today and not merged and deployed yet

No but I recall having a conversation with you @barrystokman regarding this very "Y" that was missing for some odd reason(not very odd, I removed it in https://github.com/Clinical-Genomics/demultiplexing/pull/152). Anyways, good that you solved it @moahaegglund !

[moahaegglund]

@barrystokman can you merge this so that we get the demux of HiSeqX to work?

[barrystokman]

Bumped:

Deployed:

[moahaegglund]

Thanks! :D