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Clinical-Genomics / demultiplexing

To keep scripts associated with execution of the Illumina demultiplexing pipeline
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Do not link undetermined HiseqX fastq-files if they are pooled #156

Closed henrikstranneheim closed 3 years ago

henrikstranneheim commented 3 years ago

Ensure that hiseqx-fastqfiles are not linked after demux if they are related to a pooled lane.

Currently we have the following structure if the Undetermined file is in a pooled lane: image

After this issue is resolved we would imply never create the Undetermined folder