Clinical-Genomics / demultiplexing

To keep scripts associated with execution of the Illumina demultiplexing pipeline
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# remove cgstats from demux flows #172

Closed ChrOertlin closed 1 year ago

ChrOertlin commented 1 year ago

Description

To remove cgstats we need to get remove interactions with cgstats from the automation. These demux scripts interact with cgstats and are called in crontabs.

In Addition, a line copying a sample sheet from the input directory into an unaligned directory is removed here.