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Clinical-Genomics / demultiplexing

To keep scripts associated with execution of the Illumina demultiplexing pipeline
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[WIP] Novaseq hasta #74

Closed ingkebil closed 3 years ago

ingkebil commented 5 years ago

Nothing tested yet!

henrikstranneheim commented 3 years ago

@barrystokman What about this one?

barrystokman commented 3 years ago

I see some potentially useful things in here. Not happy with demux scripts activating environments though...

if [[ ${ENVIRONMENT} == 'production' ]]; then
    useprod
else
    usestage
fi
henrikstranneheim commented 3 years ago

This has been resolved in another PR