Closed ingkebil closed 5 years ago
BPA73008-1225 BPA73008-1825 BPC29611-2526 BPC29611-3324
There you go. 4 of them! But I think only the last two are useful as we may not have created the others in LIMS
Thanks!
@ingkebil is it possible to create a test for this? What about having a test for iSeq in tests/utils/test_samplesheet.py?
Hi Patrik, yeas please add a unit test for this, wkr, kenny
In case it wasn't clear, I handed over this work to you on Wednesday ;)
Configuration: Command: Output: Expected outcome?
Command: Output: Expected outcome?
Headers should be:
@ingkebil this has been tested OK on the iSeq machine, ready for merge and deploy?
Awesome! Merge and deploy :moneybag:
I'll merge and bump. Not sure where this needs to be deployed?
It would be nice to have on both hasta and thalamus
This PR solves the retrieval of the iSeq samplesheet.
How to test?
bash update-demux-stage.sh isheet
on clinical-preproc stage.demux sheet fetch -a iseq --pad --indexlength 10 $flowcell
with $flowcell BPC29611-2526 or BPC29611-3324 (see comment below)Expected outcome The fecth command will print the samplesheet to stdout. The samplesheet should contain an index and index2 column. index should end with AT and index2 should start with AC.
Headers should be: Sample_Name | Sample_Plate | Description | I7_Index_ID | index | I5_Index_ID | index2 | Manifest | GenomeFolder | Sample_Project | Sample_Well
This is minor version bump: extending and not modifying public API.
@emiliaol can you provide a FC id?